IL_8XXL_087
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8XXL|1|S2|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XXL_087 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.2993
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8XXL|1|S2|C|1708
8XXL|1|S2|G|1709
8XXL|1|S2|C|1710
8XXL|1|S2|U|1711
*
8XXL|1|S2|A|1822
8XXL|1|S2|A|1823
8XXL|1|S2|A|1824
8XXL|1|S2|A|1825
8XXL|1|S2|G|1826
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- Programmed cell death protein 4
- Chain Ln
- 60S ribosomal protein L41
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
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