IL_8XXM_027

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_027 not in the Motif Atlas

Homologous match to IL_8C3A_416

Geometric discrepancy: 0.0769

The information below is about IL_8C3A_416

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

8XXM|1|S2|C|491
8XXM|1|S2|C|492
8XXM|1|S2|A|493
8XXM|1|S2|C|494
8XXM|1|S2|U|495
*
8XXM|1|S2|A|508
8XXM|1|S2|G|509

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24