IL_8XXM_032

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_032 not in the Motif Atlas

Geometric match to IL_3R1C_017

Geometric discrepancy: 0.1892

The information below is about IL_3R1C_017

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

8XXM|1|S2|C|537
8XXM|1|S2|U|538
8XXM|1|S2|C|539
*
8XXM|1|S2|G|544
8XXM|1|S2|A|545
8XXM|1|S2|G|546

Current chains

Chain S2

18S rRNA

Nearby chains

Chain 3G

Eukaryotic translation initiation factor 3 subunit G

Chain Se

40S ribosomal protein S30