IL_8XXM_035

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8XXM|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_035 not in the Motif Atlas

Homologous match to IL_8C3A_424

Geometric discrepancy: 0.467

The information below is about IL_8C3A_424

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8XXM|1|S2|G|606
8XXM|1|S2|U|607
8XXM|1|S2|C|608
*
8XXM|1|S2|G|635
8XXM|1|S2|C|636

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

Programmed cell death protein 4

Chain SD

40S ribosomal protein S3

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30