IL_8XXM_051

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_051 not in the Motif Atlas

Homologous match to IL_8C3A_437

Geometric discrepancy: 0.0701

The information below is about IL_8C3A_437

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8XXM|1|S2|G|928
8XXM|1|S2|G|929
8XXM|1|S2|C|930
8XXM|1|S2|C|931
*
8XXM|1|S2|G|1010
8XXM|1|S2|A|1011
8XXM|1|S2|A|1012
8XXM|1|S2|U|1013

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27