IL_8XXM_087
3D structure
- PDB id
- 8XXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XXM_087 not in the Motif Atlas
- Geometric match to IL_4E48_002
- Geometric discrepancy: 0.1291
- The information below is about IL_4E48_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8XXM|1|S2|G|1706
8XXM|1|S2|U|1707
8XXM|1|S2|C|1708
*
8XXM|1|S2|G|1826
8XXM|1|S2|U|1827
8XXM|1|S2|C|1828
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
Coloring options: