IL_8XXM_091

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGG*UCUA

Length

8 nucleotides

Bulged bases

8XXM|1|S2|U|1721, 8XXM|1|S2|U|1812

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_091 not in the Motif Atlas

Geometric match to IL_6TFF_003

Geometric discrepancy: 0.3956

The information below is about IL_6TFF_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8XXM|1|S2|U|1720
8XXM|1|S2|U|1721
8XXM|1|S2|G|1722
8XXM|1|S2|G|1723
*
8XXM|1|S2|U|1810
8XXM|1|S2|C|1811
8XXM|1|S2|U|1812
8XXM|1|S2|A|1813

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23