IL_8XXM_092

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUG*UAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_092 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3582

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8XXM|1|S2|G|1723
8XXM|1|S2|A|1724
8XXM|1|S2|U|1725
8XXM|1|S2|G|1726
*
8XXM|1|S2|U|1808
8XXM|1|S2|A|1809
8XXM|1|S2|U|1810

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23