IL_8XXM_096
3D structure
- PDB id
- 8XXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGAU*AGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XXM_096 not in the Motif Atlas
- Homologous match to IL_8C3A_480
- Geometric discrepancy: 0.1876
- The information below is about IL_8C3A_480
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8XXM|1|S2|C|1742
8XXM|1|S2|G|1743
8XXM|1|S2|G|1744
8XXM|1|S2|A|1745
8XXM|1|S2|U|1746
*
8XXM|1|S2|A|1788
8XXM|1|S2|G|1789
8XXM|1|S2|A|1790
8XXM|1|S2|A|1791
8XXM|1|S2|G|1792
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
Coloring options: