IL_8XXM_097

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_097 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1784

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8XXM|1|S2|C|1747
8XXM|1|S2|G|1748
8XXM|1|S2|G|1749
*
8XXM|1|S2|C|1785
8XXM|1|S2|U|1786
8XXM|1|S2|G|1787

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6