IL_8XXN_062

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

8XXN|1|S2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXN_062 not in the Motif Atlas

Geometric match to IL_7A0S_092

Geometric discrepancy: 0.2598

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8XXN|1|S2|U|1202
8XXN|1|S2|G|1203
8XXN|1|S2|A|1204
*
8XXN|1|S2|U|1694
8XXN|1|S2|A|1695
8XXN|1|S2|C|1696
8XXN|1|S2|A|1697

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

Programmed cell death protein 4

Chain SC

40S ribosomal protein S2

Chain Sa

40S ribosomal protein S26