IL_8XXN_087

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXN_087 not in the Motif Atlas

Homologous match to IL_8C3A_472

Geometric discrepancy: 0.1721

The information below is about IL_8C3A_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8XXN|1|S2|G|1706
8XXN|1|S2|U|1707
8XXN|1|S2|C|1708
*
8XXN|1|S2|G|1826
8XXN|1|S2|U|1827
8XXN|1|S2|C|1828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain C1

Eukaryotic translation initiation factor 1

Chain Ln

60S ribosomal protein L41