IL_8XZ3_008

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_008 not in the Motif Atlas

Homologous match to IL_8VTW_007

Geometric discrepancy: 0.1117

The information below is about IL_8VTW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8XZ3|1|A|U|239
8XZ3|1|A|G|240
8XZ3|1|A|A|241
8XZ3|1|A|G|242
8XZ3|1|A|U|243
8XZ3|1|A|A|244
8XZ3|1|A|G|245
*
8XZ3|1|A|C|253
8XZ3|1|A|G|254
8XZ3|1|A|A|255
8XZ3|1|A|A|256
8XZ3|1|A|A|257
8XZ3|1|A|G|258

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL15

Chain e

Large ribosomal subunit protein bL35