IL_8XZ3_029

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGU*AGAG

Length

7 nucleotides

Bulged bases

8XZ3|1|A|G|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_029 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.2797

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8XZ3|1|A|U|959
8XZ3|1|A|G|960
8XZ3|1|A|U|961
*
8XZ3|1|A|A|1048
8XZ3|1|A|G|1049
8XZ3|1|A|A|1050
8XZ3|1|A|G|1051

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Large ribosomal subunit protein uL30