IL_8XZ3_047

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

8XZ3|1|A|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_047 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.1836

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

8XZ3|1|A|G|1177
8XZ3|1|A|U|1178
8XZ3|1|A|U|1179
8XZ3|1|A|G|1180
*
8XZ3|1|A|C|1194
8XZ3|1|A|A|1195
8XZ3|1|A|C|1196
8XZ3|1|A|C|1197

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL11

Chain N

Large ribosomal subunit protein uL16

Chain W

Large ribosomal subunit protein bL25