IL_8XZ3_059

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_059 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.3265

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8XZ3|1|A|U|1560
8XZ3|1|A|C|1561
8XZ3|1|A|C|1562
*
8XZ3|1|A|G|1609
8XZ3|1|A|C|1610
8XZ3|1|A|A|1611

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2