IL_8XZ3_080

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

8XZ3|1|A|G|2018, 8XZ3|1|A|U|2033, 8XZ3|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_080 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1144

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8XZ3|1|A|U|2015
8XZ3|1|A|G|2016
8XZ3|1|A|C|2017
8XZ3|1|A|G|2018
8XZ3|1|A|A|2019
8XZ3|1|A|A|2020
8XZ3|1|A|G|2021
*
8XZ3|1|A|C|2030
8XZ3|1|A|G|2031
8XZ3|1|A|A|2032
8XZ3|1|A|U|2033
8XZ3|1|A|G|2034
8XZ3|1|A|U|2035
8XZ3|1|A|A|2036
8XZ3|1|A|U|2037
8XZ3|1|A|A|2038

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2