IL_8XZ3_123

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUAAC*GGAAAC

Length

12 nucleotides

Bulged bases

8XZ3|1|A|A|2989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_123 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1026

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8XZ3|1|A|G|2961
8XZ3|1|A|A|2962
8XZ3|1|A|U|2963
8XZ3|1|A|A|2964
8XZ3|1|A|A|2965
8XZ3|1|A|C|2966
*
8XZ3|1|A|G|2986
8XZ3|1|A|G|2987
8XZ3|1|A|A|2988
8XZ3|1|A|A|2989
8XZ3|1|A|A|2990
8XZ3|1|A|C|2991

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6

Chain K

Large ribosomal subunit protein uL13

Chain f

50S ribosomal protein L36