IL_8XZ3_126

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGGAAG*UGCAG

Length

11 nucleotides

Bulged bases

8XZ3|1|A|C|3088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_126 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1592

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

8XZ3|1|A|U|3068
8XZ3|1|A|G|3069
8XZ3|1|A|G|3070
8XZ3|1|A|A|3071
8XZ3|1|A|A|3072
8XZ3|1|A|G|3073
*
8XZ3|1|A|U|3086
8XZ3|1|A|G|3087
8XZ3|1|A|C|3088
8XZ3|1|A|A|3089
8XZ3|1|A|G|3090

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein bL17

Chain Q

50S ribosomal protein L19