IL_8Y0U_002

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8Y0U|1|C3|C|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_002 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.1297

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

8Y0U|1|C1|C|7
8Y0U|1|C1|C|8
*
8Y0U|1|C3|G|150
8Y0U|1|C3|C|151
8Y0U|1|C3|G|152

Current chains

Chain C1

25S rRNA

Chain C3

5.8S rRNA

Nearby chains

Chain LG

Large ribosomal subunit protein eL8A

Chain LN

Large ribosomal subunit protein eL15A

Chain LX

Large ribosomal subunit protein uL23