IL_8Y0U_029
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8Y0U|1|C1|A|933, 8Y0U|1|C1|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_029 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.1559
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8Y0U|1|C1|G|805
8Y0U|1|C1|A|806
8Y0U|1|C1|A|807
8Y0U|1|C1|A|808
8Y0U|1|C1|G|809
*
8Y0U|1|C1|C|931
8Y0U|1|C1|U|932
8Y0U|1|C1|A|933
8Y0U|1|C1|G|934
8Y0U|1|C1|U|935
8Y0U|1|C1|A|936
8Y0U|1|C1|G|937
8Y0U|1|C1|C|938
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lj
- Large ribosomal subunit protein eL37A
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