IL_8Y0U_031

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_031 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.1416

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8Y0U|1|C1|U|834
8Y0U|1|C1|G|835
8Y0U|1|C1|A|836
8Y0U|1|C1|A|837
8Y0U|1|C1|G|838
*
8Y0U|1|C1|U|855
8Y0U|1|C1|G|856
8Y0U|1|C1|G|857
8Y0U|1|C1|A|858
8Y0U|1|C1|G|859

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain LR

Large ribosomal subunit protein eL19A

Chain Lp

Large ribosomal subunit protein eL43A