IL_8Y0U_063

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_063 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.2408

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

8Y0U|1|C1|U|1501
8Y0U|1|C1|C|1502
8Y0U|1|C1|A|1503
8Y0U|1|C1|A|1504
8Y0U|1|C1|C|1505
*
8Y0U|1|C1|G|1513
8Y0U|1|C1|G|1514
8Y0U|1|C1|A|1515

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22A

Chain LR

Large ribosomal subunit protein eL19A

Chain Ll

Large ribosomal subunit protein eL39