3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
CUAAG*CGAAAG
Length
11 nucleotides
Bulged bases
8Y0U|1|C1|A|1588, 8Y0U|1|C1|A|1589
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0U_064 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.1289
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

8Y0U|1|C1|C|1532
8Y0U|1|C1|U|1533
8Y0U|1|C1|A|1534
8Y0U|1|C1|A|1535
8Y0U|1|C1|G|1536
*
8Y0U|1|C1|C|1585
8Y0U|1|C1|G|1586
8Y0U|1|C1|A|1587
8Y0U|1|C1|A|1588
8Y0U|1|C1|A|1589
8Y0U|1|C1|G|1590

Current chains

Chain C1
25S rRNA

Nearby chains

Chain C3
5.8S ribosomal RNA; 5.8S rRNA
Chain LA
Large ribosomal subunit protein uL2A
Chain Lg
Large ribosomal subunit protein eL34A
Chain Lj
Large ribosomal subunit protein eL37A
Chain Ll
Large ribosomal subunit protein eL39

Coloring options:


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