IL_8Y0U_072

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

8Y0U|1|C1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_072 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0907

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8Y0U|1|C1|U|1694
8Y0U|1|C1|U|1695
8Y0U|1|C1|A|1696
8Y0U|1|C1|A|1697
8Y0U|1|C1|C|1698
*
8Y0U|1|C1|G|1747
8Y0U|1|C1|G|1748
8Y0U|1|C1|A|1749
8Y0U|1|C1|A|1750
8Y0U|1|C1|G|1751
8Y0U|1|C1|A|1752

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein eL34A

Chain Lk

Large ribosomal subunit protein eL38