IL_8Y0U_073

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_073 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.151

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8Y0U|1|C1|U|1702
8Y0U|1|C1|U|1703
8Y0U|1|C1|A|1704
8Y0U|1|C1|U|1705
8Y0U|1|C1|C|1706
8Y0U|1|C1|A|1707
*
8Y0U|1|C1|U|1737
8Y0U|1|C1|C|1738
8Y0U|1|C1|U|1739
8Y0U|1|C1|U|1740
8Y0U|1|C1|A|1741
8Y0U|1|C1|U|1742
8Y0U|1|C1|G|1743

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein eL34A