IL_8Y0U_079

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8Y0U|1|C1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_079 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1411

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C1|C|1918
8Y0U|1|C1|G|1919
8Y0U|1|C1|U|1920
8Y0U|1|C1|A|1921
8Y0U|1|C1|A|1922
8Y0U|1|C1|C|1923
*
8Y0U|1|C1|G|1928
8Y0U|1|C1|G|1929
8Y0U|1|C1|A|1930
8Y0U|1|C1|U|1931
8Y0U|1|C1|A|1932
8Y0U|1|C1|A|1933
8Y0U|1|C1|G|1934

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

Large ribosomal subunit protein eL41A

Chain Lp

Large ribosomal subunit protein eL43A