IL_8Y0U_088

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_088 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.2032

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8Y0U|1|C1|U|2211
8Y0U|1|C1|C|2212
8Y0U|1|C1|A|2213
8Y0U|1|C1|A|2214
8Y0U|1|C1|A|2215
8Y0U|1|C1|G|2216
8Y0U|1|C1|U|2217
*
8Y0U|1|C1|A|2228
8Y0U|1|C1|A|2229
8Y0U|1|C1|C|2230
8Y0U|1|C1|C|2231
8Y0U|1|C1|A|2232
8Y0U|1|C1|A|2233
8Y0U|1|C1|G|2234

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Li

Large ribosomal subunit protein eL36A