IL_8Y0U_090

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8Y0U|1|C1|A|2281, 8Y0U|1|C1|C|2287, 8Y0U|1|C1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_090 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1463

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8Y0U|1|C1|C|2277
8Y0U|1|C1|C|2278
8Y0U|1|C1|A|2279
8Y0U|1|C1|A|2280
8Y0U|1|C1|A|2281
8Y0U|1|C1|U|2282
8Y0U|1|C1|G|2283
8Y0U|1|C1|C|2284
8Y0U|1|C1|C|2285
8Y0U|1|C1|U|2286
8Y0U|1|C1|C|2287
8Y0U|1|C1|G|2288
*
8Y0U|1|C1|C|2304
8Y0U|1|C1|G|2305
8Y0U|1|C1|C|2306
8Y0U|1|C1|G|2307

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

Large ribosomal subunit protein eL41A