IL_8Y0U_097

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_097 not in the Motif Atlas

Geometric match to IL_4V84_071

Geometric discrepancy: 0.2356

The information below is about IL_4V84_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8Y0U|1|C1|A|2447
8Y0U|1|C1|G|2448
8Y0U|1|C1|A|2449
*
8Y0U|1|C1|U|2497
8Y0U|1|C1|U|2498
8Y0U|1|C1|U|2499

Current chains

Chain C1

25S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A