IL_8Y0U_122

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8Y0U|1|C1|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_122 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.1322

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8Y0U|1|C1|A|3103
8Y0U|1|C1|U|3104
8Y0U|1|C1|U|3105
8Y0U|1|C1|A|3106
8Y0U|1|C1|U|3107
*
8Y0U|1|C1|A|3127
8Y0U|1|C1|G|3128
8Y0U|1|C1|A|3129
8Y0U|1|C1|A|3130
8Y0U|1|C1|U|3131

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6A

Chain LO

Large ribosomal subunit protein uL13A

Chain Lm

Ubiquitin-ribosomal protein eL40A fusion protein