IL_8Y0U_170

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_170 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2036

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8Y0U|1|C2|A|550
8Y0U|1|C2|G|551
8Y0U|1|C2|G|552
8Y0U|1|C2|G|553
8Y0U|1|C2|C|554
8Y0U|1|C2|A|555
8Y0U|1|C2|A|556
8Y0U|1|C2|G|557
*
8Y0U|1|C2|C|587
8Y0U|1|C2|U|588

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SJ

40S ribosomal protein S9-A

Chain Se

40S ribosomal protein S30-A