IL_8Y0U_175
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_175 not in the Motif Atlas
- Homologous match to IL_8C3A_428
- Geometric discrepancy: 0.108
- The information below is about IL_8C3A_428
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8Y0U|1|C2|C|627
8Y0U|1|C2|G|628
8Y0U|1|C2|U|629
8Y0U|1|C2|A|630
8Y0U|1|C2|G|631
*
8Y0U|1|C2|U|968
8Y0U|1|C2|C|969
8Y0U|1|C2|A|970
8Y0U|1|C2|A|971
8Y0U|1|C2|G|972
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain SL
- Small ribosomal subunit protein uS17A
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S22-A
- Chain SX
- 40S ribosomal protein S23-A
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