IL_8Y0U_179
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_179 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2446
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8Y0U|1|C2|G|751
8Y0U|1|C2|A|752
8Y0U|1|C2|A|753
8Y0U|1|C2|A|754
8Y0U|1|C2|A|755
8Y0U|1|C2|A|756
8Y0U|1|C2|A|757
8Y0U|1|C2|U|758
8Y0U|1|C2|U|759
*
8Y0U|1|C2|A|791
8Y0U|1|C2|U|792
8Y0U|1|C2|A|793
8Y0U|1|C2|U|794
8Y0U|1|C2|U|795
8Y0U|1|C2|A|796
8Y0U|1|C2|G|797
8Y0U|1|C2|C|798
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4-A
- Chain SJ
- 40S ribosomal protein S9-A
- Chain SL
- Small ribosomal subunit protein uS17A
- Chain SW
- 40S ribosomal protein S22-A
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