3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
GAAAAAAUU*AUAUUAGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0U_179 not in the Motif Atlas
Homologous match to IL_4V88_425
Geometric discrepancy: 0.2446
The information below is about IL_4V88_425
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53064.1
Basepair signature
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

8Y0U|1|C2|G|751
8Y0U|1|C2|A|752
8Y0U|1|C2|A|753
8Y0U|1|C2|A|754
8Y0U|1|C2|A|755
8Y0U|1|C2|A|756
8Y0U|1|C2|A|757
8Y0U|1|C2|U|758
8Y0U|1|C2|U|759
*
8Y0U|1|C2|A|791
8Y0U|1|C2|U|792
8Y0U|1|C2|A|793
8Y0U|1|C2|U|794
8Y0U|1|C2|U|795
8Y0U|1|C2|A|796
8Y0U|1|C2|G|797
8Y0U|1|C2|C|798

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4-A
Chain SJ
40S ribosomal protein S9-A
Chain SL
Small ribosomal subunit protein uS17A
Chain SW
40S ribosomal protein S22-A

Coloring options:


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