IL_8Y0U_186

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_186 not in the Motif Atlas

Homologous match to IL_8C3A_439

Geometric discrepancy: 0.1039

The information below is about IL_8C3A_439

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8Y0U|1|C2|G|885
8Y0U|1|C2|U|886
8Y0U|1|C2|A|887
8Y0U|1|C2|U|888
*
8Y0U|1|C2|A|924
8Y0U|1|C2|G|925
8Y0U|1|C2|A|926
8Y0U|1|C2|C|927

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1-A

Chain SO

Small ribosomal subunit protein uS11B

Chain Sa

Small ribosomal subunit protein eS26B