IL_8Y0U_188
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- GUCAG*CUUGGAUU
- Length
- 13 nucleotides
- Bulged bases
- 8Y0U|1|C2|G|913
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_188 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.2095
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
8Y0U|1|C2|G|895
8Y0U|1|C2|U|896
8Y0U|1|C2|C|897
8Y0U|1|C2|A|898
8Y0U|1|C2|G|899
*
8Y0U|1|C2|C|910
8Y0U|1|C2|U|911
8Y0U|1|C2|U|912
8Y0U|1|C2|G|913
8Y0U|1|C2|G|914
8Y0U|1|C2|A|915
8Y0U|1|C2|U|916
8Y0U|1|C2|U|917
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain SB
- 40S ribosomal protein S1-A
- Chain SO
- Small ribosomal subunit protein uS11B
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