IL_8Y0U_194
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- GGAGUAUGG*CUGAAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_194 not in the Motif Atlas
- Geometric match to IL_6CZR_146
- Geometric discrepancy: 0.1505
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8Y0U|1|C2|G|1111
8Y0U|1|C2|G|1112
8Y0U|1|C2|A|1113
8Y0U|1|C2|G|1114
8Y0U|1|C2|U|1115
8Y0U|1|C2|A|1116
8Y0U|1|C2|U|1117
8Y0U|1|C2|G|1118
8Y0U|1|C2|G|1119
*
8Y0U|1|C2|C|1128
8Y0U|1|C2|U|1129
8Y0U|1|C2|G|1130
8Y0U|1|C2|A|1131
8Y0U|1|C2|A|1132
8Y0U|1|C2|A|1133
8Y0U|1|C2|C|1134
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- Large ribosomal subunit protein eL41A
- Chain SX
- 40S ribosomal protein S23-A
Coloring options: