IL_8Y0U_208

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_208 not in the Motif Atlas

Homologous match to IL_8C3A_460

Geometric discrepancy: 0.3644

The information below is about IL_8C3A_460

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8Y0U|1|C2|C|1306
8Y0U|1|C2|U|1307
8Y0U|1|C2|G|1308
*
8Y0U|1|C2|C|1317
8Y0U|1|C2|G|1318

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2A