IL_8Y0U_212

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CUA*UGGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_212 not in the Motif Atlas

Homologous match to IL_8C3A_465

Geometric discrepancy: 0.1801

The information below is about IL_8C3A_465

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76236.1

Basepair signature

cWW-tWH-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8Y0U|1|C2|C|1389
8Y0U|1|C2|U|1390
8Y0U|1|C2|A|1391
*
8Y0U|1|C2|U|1407
8Y0U|1|C2|G|1408
8Y0U|1|C2|G|1409
8Y0U|1|C2|A|1410
8Y0U|1|C2|A|1411
8Y0U|1|C2|G|1412

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9A