IL_8Y0U_218

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_218 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.1558

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8Y0U|1|C2|G|1638
8Y0U|1|C2|C|1639
8Y0U|1|C2|C|1640
8Y0U|1|C2|C|1641
*
8Y0U|1|C2|G|1760
8Y0U|1|C2|U|1761
8Y0U|1|C2|A|1762
8Y0U|1|C2|A|1763
8Y0U|1|C2|C|1764

Current chains

Chain C2

18S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

Large ribosomal subunit protein eL41A