IL_8Y0U_244

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AGUU*AAU

Length

7 nucleotides

Bulged bases

8Y0U|1|C1|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_244 not in the Motif Atlas

Geometric match to IL_4E48_001

Geometric discrepancy: 0.3033

The information below is about IL_4E48_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8Y0U|1|C1|A|983
8Y0U|1|C1|G|984
8Y0U|1|C1|U|985
8Y0U|1|C1|U|986
*
8Y0U|1|C1|A|1098
8Y0U|1|C1|A|1099
8Y0U|1|C1|U|1100

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30A

Chain LT

Large ribosomal subunit protein eL21A

Chain Lb

Large ribosomal subunit protein eL29