IL_8Y0U_254

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUUG*CAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_254 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.2482

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8Y0U|1|C2|U|748
8Y0U|1|C2|U|749
8Y0U|1|C2|U|750
8Y0U|1|C2|G|751
*
8Y0U|1|C2|C|798
8Y0U|1|C2|A|799
8Y0U|1|C2|U|800
8Y0U|1|C2|G|801

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SH

40S ribosomal protein S7-A

Chain SL

Small ribosomal subunit protein uS17A

Chain SW

40S ribosomal protein S22-A