IL_8Y0U_260
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8Y0U|1|C2|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_260 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3012
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8Y0U|1|C2|A|1224
8Y0U|1|C2|U|1225
8Y0U|1|C2|A|1226
8Y0U|1|C2|A|1227
8Y0U|1|C2|G|1228
8Y0U|1|C2|G|1229
8Y0U|1|C2|A|1230
8Y0U|1|C2|U|1231
8Y0U|1|C2|U|1232
8Y0U|1|C2|G|1233
*
8Y0U|1|C2|C|1252
8Y0U|1|C2|U|1253
8Y0U|1|C2|U|1254
8Y0U|1|C2|G|1255
8Y0U|1|C2|A|1256
8Y0U|1|C2|U|1257
8Y0U|1|C2|U|1258
8Y0U|1|C2|U|1259
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain Sd
- Small ribosomal subunit protein uS14A
- Chain Sf
- Ubiquitin-ribosomal protein eS31 fusion protein
Coloring options: