IL_8Y0U_262

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_262 not in the Motif Atlas

Homologous match to IL_8P9A_464

Geometric discrepancy: 0.5328

The information below is about IL_8P9A_464

Detailed Annotation

Isolated tWW contact

Broad Annotation

Isolated tWW contact

Motif group

IL_55553.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8Y0U|1|C2|U|1688
8Y0U|1|C2|A|1689
8Y0U|1|C2|G|1690
*
8Y0U|1|C2|C|1711
8Y0U|1|C2|A|1712
8Y0U|1|C2|G|1713

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

Large ribosomal subunit protein eL24A

Chain SG

40S ribosomal protein S6-A