3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
GUCAAG*CGACAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0U_264 not in the Motif Atlas
Geometric match to IL_1L9A_008
Geometric discrepancy: 0.3691
The information below is about IL_1L9A_008
Detailed Annotation
tSH-tHW-tHS-cWW
Broad Annotation
No text annotation
Motif group
IL_71294.3
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

8Y0U|1|C1|G|2834
8Y0U|1|C1|U|2835
8Y0U|1|C1|C|2836
8Y0U|1|C1|A|2837
8Y0U|1|C1|A|2838
8Y0U|1|C1|G|2839
*
8Y0U|1|C1|C|2849
8Y0U|1|C1|G|2850
8Y0U|1|C1|A|2851
8Y0U|1|C1|C|2852
8Y0U|1|C1|A|2853
8Y0U|1|C1|U|2854

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LI
Large ribosomal subunit protein uL16
Chain Lm
Ubiquitin-ribosomal protein eL40A fusion protein

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