IL_8Y0U_264
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- GUCAAG*CGACAU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_264 not in the Motif Atlas
- Geometric match to IL_1L9A_008
- Geometric discrepancy: 0.3691
- The information below is about IL_1L9A_008
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_71294.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Y0U|1|C1|G|2834
8Y0U|1|C1|U|2835
8Y0U|1|C1|C|2836
8Y0U|1|C1|A|2837
8Y0U|1|C1|A|2838
8Y0U|1|C1|G|2839
*
8Y0U|1|C1|C|2849
8Y0U|1|C1|G|2850
8Y0U|1|C1|A|2851
8Y0U|1|C1|C|2852
8Y0U|1|C1|A|2853
8Y0U|1|C1|U|2854
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LI
- Large ribosomal subunit protein uL16
- Chain Lm
- Ubiquitin-ribosomal protein eL40A fusion protein
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