IL_8Y0W_025

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8Y0W|1|L5|G|666, 8Y0W|1|L5|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_025 not in the Motif Atlas

Geometric match to IL_3IWN_001

Geometric discrepancy: 0.3705

The information below is about IL_3IWN_001

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

8Y0W|1|L5|G|487
8Y0W|1|L5|G|488
*
8Y0W|1|L5|C|665
8Y0W|1|L5|G|666
8Y0W|1|L5|A|667
8Y0W|1|L5|C|668
8Y0W|1|L5|C|669

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28