IL_8Y0W_126

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8Y0W|1|L5|A|3785, 8Y0W|1|L5|C|3791, 8Y0W|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_126 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0725

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8Y0W|1|L5|C|3781
8Y0W|1|L5|C|3782
8Y0W|1|L5|A|3783
8Y0W|1|L5|A|3784
8Y0W|1|L5|A|3785
8Y0W|1|L5|U|3786
8Y0W|1|L5|G|3787
8Y0W|1|L5|C|3788
8Y0W|1|L5|C|3789
8Y0W|1|L5|U|3790
8Y0W|1|L5|C|3791
8Y0W|1|L5|G|3792
*
8Y0W|1|L5|C|3808
8Y0W|1|L5|G|3809
8Y0W|1|L5|C|3810
8Y0W|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA