IL_8Y0W_206
3D structure
- PDB id
- 8Y0W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with eIF5A, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGA*UAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0W_206 not in the Motif Atlas
- Homologous match to IL_8C3A_413
- Geometric discrepancy: 0.0748
- The information below is about IL_8C3A_413
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 49
Unit IDs
8Y0W|1|S2|G|437
8Y0W|1|S2|G|438
8Y0W|1|S2|A|439
*
8Y0W|1|S2|U|454
8Y0W|1|S2|A|455
8Y0W|1|S2|C|456
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
Coloring options: