IL_8Y0W_228
3D structure
- PDB id
- 8Y0W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with eIF5A, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GACC*GGCC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0W_228 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.2331
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8Y0W|1|S2|G|874
8Y0W|1|S2|A|875
8Y0W|1|S2|C|876
8Y0W|1|S2|C|877
*
8Y0W|1|S2|G|909
8Y0W|1|S2|G|910
8Y0W|1|S2|C|911
8Y0W|1|S2|C|912
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SH
- 40S ribosomal protein S7
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