3D structure

PDB id
8Y0W (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with eIF5A, eEF2 and SERBP1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GACC*GGCC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8Y0W_228 not in the Motif Atlas
Geometric match to IL_3WBM_003
Geometric discrepancy: 0.2331
The information below is about IL_3WBM_003
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8Y0W|1|S2|G|874
8Y0W|1|S2|A|875
8Y0W|1|S2|C|876
8Y0W|1|S2|C|877
*
8Y0W|1|S2|G|909
8Y0W|1|S2|G|910
8Y0W|1|S2|C|911
8Y0W|1|S2|C|912

Current chains

Chain S2
18S rRNA

Nearby chains

Chain LR
60S ribosomal protein L19
Chain SH
40S ribosomal protein S7

Coloring options:


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