IL_8Y0W_268

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8Y0W|1|S2|C|1701, 8Y0W|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_268 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.17

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8Y0W|1|S2|C|1700
8Y0W|1|S2|C|1701
8Y0W|1|S2|G|1702
*
8Y0W|1|S2|C|1833
8Y0W|1|S2|A|1834
8Y0W|1|S2|A|1835
8Y0W|1|S2|G|1836

Current chains

Chain S2

18S rRNA

Nearby chains

Chain S

Isoform 2 of SERPINE1 mRNA-binding protein 1

Chain SC

40S ribosomal protein S2

Chain Sa

40S ribosomal protein S26